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1

TRANSITION PATH SAMPLING: Throwing Ropes Over Rough Mountain Passes, in the Dark

Bolhuis, Peter G., Chandler, David, Dellago, Christoph, Geissler, Phillip L.

Journal:

Annual Review of Physical Chemistry

Year:

2002

Language:

english

File:

PDF, 541 KB

english, 2002

2

Reaction rate theory for supramolecular kinetics: application to protein aggregation

Michaels, Thomas C. T., Liu, Lucie X., Curk, Samo, Bolhuis, Peter G., Šarić, Anđela, Knowles, Tuomas P. J.

Journal:

Molecular Physics

Year:

2018

Language:

english

File:

PDF, 2.52 MB

english, 2018

3

OpenPathSampling: A Python framework for path sampling simulations. I. Basics

Swenson, David, Prinz, Jan-Hendrik, Noé, Frank, Chodera, John Damon, Bolhuis, Peter G.

Journal:

Journal of Chemical Theory and Computation

Year:

2018

Language:

english

File:

PDF, 2.65 MB

english, 2018

4

OpenPathSampling: A Python framework for path sampling simulations. II. Building and customizing path ensembles and sample schemes

Swenson, David, Prinz, Jan-Hendrik, Noé, Frank, Chodera, John Damon, Bolhuis, Peter G.

Journal:

Journal of Chemical Theory and Computation

Year:

2018

Language:

english

File:

PDF, 4.81 MB

english, 2018

5

A Molecular Mechanism of Hysteresis in Clay Swelling

Tim J. Tambach, Peter G. Bolhuis, Berend Smit

Journal:

Angewandte Chemie

Year:

2004

Language:

english

File:

PDF, 229 KB

english, 2004

6

Major growth reduction and minor decrease in mitochondrial enzyme activity in cultured human muscle cells after exposure to zidovudine

Nicole H. Herzberg, Ina Zorn, Rob Zwart, Peter Portegies, Pieter A. Bolhuis

Journal:

Year:

1992

Language:

english

File:

PDF, 406 KB

english, 1992

7

Hysteresis in Clay Swelling Induced by Hydrogen Bonding: Accurate Prediction of Swelling States

Tambach, Tim J., Bolhuis, Peter G., Hensen, Emiel J. M., Smit, Berend

Journal:

Year:

2006

Language:

english

File:

PDF, 1.97 MB

english, 2006

8

Efficient transition path sampling: Application to Lennard-Jones cluster rearrangements

Dellago, Christoph, Bolhuis, Peter G., Chandler, David

Journal:

The Journal of Chemical Physics

Year:

1998

Language:

english

File:

PDF, 652 KB

english, 1998

9

A randomized controlled trial of nonoperative treatment versus open reduction and internal fixation for stable, displaced, partial articular fractures of the radial head: the RAMBO trial

Bruinsma, Wendy, Kodde, Izaäk, de Muinck Keizer, Robert-Jan, Kloen, Peter, Lindenhovius, Anneluuk, Vroemen, Jos, Haverlag, Robert, van den Bekerom, Michel, Bolhuis, Hugo, Bullens, Pieter, Meylaerts, S

Journal:

BMC Musculoskeletal Disorders

Year:

2014

Language:

english

File:

PDF, 173 KB

english, 2014

10

Rotational diffusion affects the dynamical self-assembly pathways of patchy particles

Newton, Arthur C., Groenewold, Jan, Kegel, Willem K., Bolhuis, Peter G.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

11

The intrinsic rate constants in diffusion-influenced reactions

Vijaykumar, Adithya, Bolhuis, Peter G, ten Wolde, Pieter Rein

Journal:

Faraday Discussions

Year:

2016

Language:

english

File:

PDF, 1.51 MB

english, 2016

12

New methods: general discussion

Angulo, Gonzalo, Astumian, Raymond Dean, Beniwal, Vijay, Bolhuis, Peter G., Dellago, Christoph, Ellis, John, Ensing, Bernd, Glowacki, David R., Hammes-Schiffer, Sharon, Kästner, Johannes, Lelièvre, To

Journal:

Faraday Discussions

Year:

2016

Language:

english

File:

PDF, 327 KB

english, 2016

13

Water Structure and Dynamics in the Hydration Layer of a Type III Anti-freeze Protein

Brotzakis, Zacharias Faidon, Voets, Ilja Karina, Bakker, Huib J., Bolhuis, Peter G

Journal:

Physical Chemistry Chemical Physics

Year:

2018

Language:

english

File:

PDF, 5.11 MB

english, 2018

14

Childhood aggression and the co-occurrence of behavioural and emotional problems: results across ages 3–16 years from multiple raters in six cohorts in the EU-ACTION project

Bartels, Meike, Hendriks, Anne, Mauri, Matteo, Krapohl, Eva, Whipp, Alyce, Bolhuis, Koen, Conde, Lucia Colodro, Luningham, Justin, Fung Ip, Hill, Hagenbeek, Fiona, Roetman, Peter, Gatej, Raluca, Lamer

Journal:

European Child & Adolescent Psychiatry

Year:

2018

Language:

english

File:

PDF, 1.15 MB

english, 2018

15

Nested Transition Path Sampling

Bolhuis, Peter G., Csányi, Gábor

Journal:

Physical Review Letters

Year:

2018

Language:

english

File:

PDF, 563 KB

english, 2018

16

Modelling Skylarks (Alauda arvensis) to Predict Impacts of Changes in Land Management and Policy: Development and Testing of an Agent-Based Model

Topping, Christopher J., Odderskær, Peter, Kahlert, Johnny, Bolhuis, Johan J.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.21 MB

english, 2013

17

Two-state protein folding kinetics through all-atom molecular dynamics based sampling

Bolhuis, Peter, G.

Journal:

Frontiers in Bioscience

Year:

2009

Language:

english

File:

PDF, 1.41 MB

english, 2009

18

Penile studies and heterosexual partners. Peniscopy, cytology, histology, and immunocytochemistry

Mathilde E. Boon, Peter Bolhuis, Achin Schneider, Cornelis J. A. Hogewoning, Theo H. van der Kwast, Lambrecht P. Kok

Journal:

Year:

1988

Language:

english

File:

PDF, 917 KB

english, 1988

19

Clinically distinct codon 69 mutations in major myelin protein zero in demyelinating neuropathies

Peter H. S. Meijerink, Ina Zorn, Frank Baas, Marianne de Visser, Dr Pieter A. Bolhuis, Jessica E. Hoogendijk, Henk Veldman, Anneke A. W. M. Gabreëls-Festen

Journal:

Annals of Neurology

Year:

1996

Language:

english

File:

PDF, 440 KB

english, 1996

20

A Molecular Mechanism of Hysteresis in Clay Swelling

Tim J. Tambach, Peter G. Bolhuis, Berend Smit

Journal:

Angewandte Chemie International Edition

Year:

2004

Language:

english

File:

PDF, 229 KB

english, 2004

21

Elaborating Transition Interface Sampling Methods

Titus S. van Erp, Peter G. Bolhuis

Journal:

Year:

2004

File:

PDF, 7 KB

2004

22

Two intronic mutations in the adrenoleukodystrophy gene

Stephan Kemp, Marjolijn J. L. Ligtenberg, Björn M. van Geel, Peter G. Barth, Claude-Olivier Sarde, Bernard A. van Oost, Pieter A. Bolhuis

Journal:

Year:

1995

Language:

english

File:

PDF, 168 KB

english, 1995

23

Icam - melanoma cells are relatively resistant to cd3-mediated t-cell lysis

Eric Braakman, Peter S. Goedegebuure, Rea J. Vreugdenhil, David M. Segal, Stephen Shaw, Reinder L. H. Bolhuis

Journal:

International Journal of Cancer

Year:

1990

Language:

english

File:

PDF, 794 KB

english, 1990

24

‘Nonspecific’ MHC-unrestricted killer cells and their receptors

Peter Hersey, Reinder Bolhuis

Journal:

Immunology Today

Year:

1987

Language:

english

File:

PDF, 1.00 MB

english, 1987

25

MHC-unrestricted killing by T cells - multireceptor hypothesis

Peter Hersey, R.L.H Bolhuis

Journal:

Immunology Today

Year:

1990

Language:

english

File:

PDF, 159 KB

english, 1990

26

Light scattering and sedimentation equilibrium of a concentrated multicomponent hard rod dispersion

Peter G. Bolhuis, Hendrik N.W. Lekkerkerker

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1993

Language:

english

File:

PDF, 702 KB

english, 1993

27

Investigating rare events by transition interface sampling

Daniele Moroni, Titus S. van Erp, Peter G. Bolhuis

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2004

Language:

english

File:

PDF, 201 KB

english, 2004

28

Liquid-like behavior in colloidal crystals

Daan Frenkel, Peter Bladon, Peter Bolhuis, Maarten Hagen

Journal:

Physica B: Condensed Matter

Year:

1996

Language:

english

File:

PDF, 563 KB

english, 1996

29

Bacillus subtilis can modulate its capacity and specificity for protein secretion through temporally controlled expression of the sipS gene for signal peptidase I

Albert Bolhuis, Alexei Sorokin, Vasco Azevedo, S. Dusko Ehrlich, Peter G. Braun, Anne De Jong, Gerard Venema, Sierd Bron, Jan Maarten van Dijl

Journal:

Molecular Microbiology

Year:

1996

Language:

english

File:

PDF, 850 KB

english, 1996

30

Helix formation is a dynamical bottleneck in the recovery reaction of Photoactive Yellow Protein

Jocelyne Vreede, Klaas J. Hellingwerf, Peter G. Bolhuis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 899 KB

english, 2008

31

NADH:Q1oxidoreductase deficiency without lactic acidosis in a patient with leigh syndrome: Implications for the diagnosis of inborn errors of the respiratory chain

F. A. Wijburg, R. J. A. Wanders, E. M. van Lie Peters, G. D. Vos, H. G. Loggers, P. A. Bolhuis, N. H. Herzberg, W. Ruitenbeek, A. van Wilsem, R. ten Houten, P. G. Barth

Journal:

Journal of Inherited Metabolic Disease

Year:

1991

Language:

english

File:

PDF, 305 KB

english, 1991

32

On the Relation Between Projections of the Reweighted Path Ensemble

Peter G. Bolhuis, Wolfgang Lechner

Journal:

Journal of Statistical Physics

Year:

2011

Language:

english

File:

PDF, 857 KB

english, 2011

33

Elaborating transition interface sampling methods

Titus S. van Erp, Peter G. Bolhuis

Journal:

Journal of Computational Physics

Year:

2005

Language:

english

File:

PDF, 392 KB

english, 2005

34

Microscopic and mesoscopic simulation of entropic micelles

Peter G. Bolhuis, Daan Frenkel

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1997

Language:

english

File:

PDF, 693 KB

english, 1997

35

THE FUTURE OF THE HISTORICAL MILITARY FLOOD DEFENSIVE SYSTEM

PETER VAN BOLHUIS, PETER VRIJLANDT

Journal:

Tijdschrift voor economische en sociale geografie

Year:

1996

Language:

english

File:

PDF, 833 KB

english, 1996

36

On the calculation of reaction rate constants in the transition path ensemble

Dellago, Christoph, Bolhuis, Peter G., Chandler, David

Journal:

The Journal of Chemical Physics

Year:

1999

Language:

english

File:

PDF, 481 KB

english, 1999

37

Numerical study of the phase diagram of a mixture of spherical and rodlike colloids

Bolhuis, Peter, Frenkel, Daan

Journal:

The Journal of Chemical Physics

Year:

1994

Language:

english

File:

PDF, 824 KB

english, 1994

38

Transition path sampling of protein conformational changes

Jarek Juraszek, Jocelyne Vreede, Peter G. Bolhuis

Journal:

Chemical Physics

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

39

Contraction stress and bond strength to dentinfor compatible and incompatible combinations of bonding systems and chemical and light-cured core build-up resin composites

Peter B. Bolhuis, Anton J. de Gee, Cornelis J. Kleverlaan, Ahmed A. El Zohairy, Albert J. Feilzer

Journal:

Dental Materials

Year:

2006

Language:

english

File:

PDF, 192 KB

english, 2006

40

Actinomycete integrative and conjugative pMEA-like elements of Amycolatopsis and Saccharopolyspora decoded

Evelien M. te Poele, Markiyan Samborskyy, Markiyan Oliynyk, Peter F. Leadlay, Henk Bolhuis, Lubbert Dijkhuizen

Journal:

Year:

2008

Language:

english

File:

PDF, 579 KB

english, 2008

41

The genome of the square archaeonHaloquadratum walsbyi: life at the limits of water activity

Henk Bolhuis, Peter Palm, Andy Wende, Michaela Falb, Markus Rampp, Francisco Rodriguez-Valera, Friedhelm Pfeiffer, Dieter Oesterhelt

Journal:

Year:

2006

Language:

english

File:

PDF, 1.97 MB

english, 2006

42

Peroxisomes and peroxisomal functions in muscle: Studies with muscle cells from controls and a patient with the cerebro-hepato-renal (Zellweger) syndrome

Ronald J.A. Wanders, Peter G. Barth, Carlo W.T. Van Roermund, Rob Ofman, Ruud Wolterman, Ruud B.H. Schutgens, Joseph M. Tager, Henk Van Den Bosch, Piet A. Bolhuis

Journal:

Experimental Cell Research

Year:

1987

Language:

english

File:

PDF, 406 KB

english, 1987

43

Altered kinetics of cytochrome c oxidase in a patient with severe mitochondrial encephalomyopathy

Leo G.J. Nijtmans, Peter G. Barth, Carsten R. Lincke, Mieke J.M. Van Galen, Rob Zwart, Petr Klement, Peeter A. Bolhuis, Wim Ruitenbeek, Ronald J.A. Wanders, Coby Van den Bogert

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease

Year:

1995

Language:

english

File:

PDF, 998 KB

english, 1995

44

X Chromosome Inactivation in Carriers of Barth Syndrome

Karen Helene Ørstavik, Ragnhild E. Ørstavik, Anna K. Naumova, Patrizia D'Adamo, Agi Gedeon, Pieter A. Bolhuis, Peter G. Barth, Daniela Toniolo

Journal:

The American Journal of Human Genetics

Year:

1998

Language:

english

File:

PDF, 607 KB

english, 1998

45

The X-Linked Gene G4.5 Is Responsible for Different Infantile Dilated Cardiomyopathies

Patrizia D'Adamo, Lucia Fassone, Agi Gedeon, Emiel A.M. Janssen, Silvia Bione, Pieter A. Bolhuis, Peter G. Barth, Meredith Wilson, Eric Haan, Karen Helen Örstavik, Michael A. Patton, Andrew J. Green,

Journal:

The American Journal of Human Genetics

Year:

1997

Language:

english

File:

PDF, 176 KB

english, 1997

46

Copper(II) and Palladium(II) Complexes with Cytotoxic and Antibacterial Activity

Krause-Heuer, Anwen M., Leverett, Peter, Bolhuis, Albert, Aldrich-Wright, Janice R.

Journal:

Australian Journal of Chemistry

Year:

2012

Language:

english

File:

PDF, 522 KB

english, 2012

47

Statics and Dynamics of Free and Hydrogen-Bonded OH Groups at the Air/Water Interface

Vila Verde, Ana, Bolhuis, Peter G., Campen, R. Kramer

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 2.57 MB

english, 2012

48

Metallothionein in Menkes' disease: Induction in cultured muscle cells

Nicole H. Herzberg, Ruud A. Wolterman, Gert Jan van den Berg, Peter G. Barth, Piet A. Bolhuis

Journal:

Journal of the Neurological Sciences

Year:

1990

Language:

english

File:

PDF, 4.56 MB

english, 1990

49

(Un)Folding Mechanisms of the FBP28 WW Domain in Explicit Solvent Revealed by Multiple Rare Event Simulation Methods

Juraszek, Jarek, Bolhuis, Peter G.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 1.31 MB

english, 2010

50

Molecular Dynamics Simulation Study of Isolated Hamp Domain

Zhu, Lizhe, Bolhuis, Peter, Vreede, Jocelyne

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 72 KB

english, 2010